SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCCTCCGGGGAAACCCGGGGAGTTAA
1._RUQ_1081
_______AC___AG__
2._RUQ_1081
_______AC___AG__
3._RUQ_36
_______AC___AG__
4._RUQ_1081
_______AC___AG__
5._PA_137_[PER]
_______AC___AG__
6._PA_137_[PER]
_______AC___AG__
7._PA_137_[PER]
_______AC___AG__
8._PA_137_[PER]
_______AC___AG__
9._PA_137_[PER]
_______AC___AG__
10._PA_137_[PER]
_______AC___AG__
11._PA_137_[PER]
_______AC___AG__
12._PA_137_[PER]
_______AC___AG__
13._PA_137_[PER]
_______AC___AG__
14._PA_137_[PER]
_______AC___AG__
15._PA_137_[PER]
_______AC___AG__
16._PA_137_[PER]
_______AC___AG__
17._PA_137_[PER]
_______AC___AG__
18._PA_137_[PER]
_______AC___AG__
19._RUQ_36
_______AC___AG__
20._GC-05-117-3-19
_______AC___AG__
21._GC-05-009-1-09
_______AC___AG__
22._GC-05-009-1-09
_______AC___AG__
23._GC-05-009-1-09
_______AC___AG__
24._GC-05-009-1-09
_______AC___AG__
25._GC-05-009-1-09
_______AC___AG__
26._GC-05-117-3-19
_______AC___AG__
27._GC-05-117-3-19
_______AC___AG__
28._GC-05-117-3-19
_______AC___AG__
29._GC-05-117-3-19
_______AC___AG__
30._RUQ_36
_______AC___AG__
31._PA137[PER]
_______AC___AG__
32._RUQ_36
_______AC___AG__
33._MITC-000400
_______AC___AG__
34._PA_137_[PER]_Fld#_201_Plt#_2
_______AC___AG__
 1516171819202122232425262728
_Input profile
GGAACTAACCACAGCGAACCTTCCGGCC
1._RUQ_1081
GG____AC_CG_CCTT___
2._RUQ_1081
_____AC_CG_CC____
3._RUQ_36
_____AC_CG_CC____
4._RUQ_1081
_____AC_CG_CC____
5._PA_137_[PER]
_____AC_CG_CC____
6._PA_137_[PER]
_____AC_CG_CC____
7._PA_137_[PER]
_____AC_CG_CC____
8._PA_137_[PER]
_____AC_CG_CC____
9._PA_137_[PER]
_____AC_CG_CC____
10._PA_137_[PER]
_____AC_CG_CC____
11._PA_137_[PER]
_____AC_CG_CC____
12._PA_137_[PER]
_____AC_CG_CC____
13._PA_137_[PER]
_____AC_CG_CC____
14._PA_137_[PER]
_____AC_CG_CC____
15._PA_137_[PER]
_____AC_CG_CC____
16._PA_137_[PER]
_____AC_CG_CC____
17._PA_137_[PER]
_____AC_CG_CC____
18._PA_137_[PER]
_____AC_CG_CC____
19._RUQ_36
-____AC_CG_--___
20._GC-05-117-3-19
GG____AC_CG_CCTT___
21._GC-05-009-1-09
GG____AC_CG_CCTT___
22._GC-05-009-1-09
GG____AC_CG_CCTT___
23._GC-05-009-1-09
GG____AC_CG_CCTT___
24._GC-05-009-1-09
GG____AC_CG_CCTT___
25._GC-05-009-1-09
GG____AC_CG_CCTT___
26._GC-05-117-3-19
GG____AC_CG_CCTT___
27._GC-05-117-3-19
GG____AC_CG_CCTT___
28._GC-05-117-3-19
GG____AC_CG_CCTT___
29._GC-05-117-3-19
GG____AC_CG_CCTT___
30._RUQ_36
_____AC_CG______
31._PA137[PER]
_______CG_CCTT___
32._RUQ_36
GG____AC_CG_CCAA___
33._MITC-000400
GG____AC_CG_CCAA___
34._PA_137_[PER]_Fld#_201_Plt#_2
GG____AC_CG_CCAA___
 2930313233343536373839404142
_Input profile
AACCCCGGGGCTTTAAAATTGGGGCCAG
1._RUQ_1081
__CCGGGG__AA__GG-_AG
2._RUQ_1081
AA__GG______GG__AG
3._RUQ_36
AA__GG______GG__AG
4._RUQ_1081
AA__GG______GG__AG
5._PA_137_[PER]
AA__GG______GG__AG
6._PA_137_[PER]
AA__-_____TTGG__AG
7._PA_137_[PER]
AA__GG______GG__AG
8._PA_137_[PER]
AA__GG______GG__AG
9._PA_137_[PER]
AG__GG______GG__AG
10._PA_137_[PER]
AG__GG______GG__AG
11._PA_137_[PER]
AG__GG______GG__AG
12._PA_137_[PER]
AG__GG______GG__AG
13._PA_137_[PER]
AG__GG______GG__AG
14._PA_137_[PER]
AG__GG______GG__AG
15._PA_137_[PER]
AG__GG______GG__AG
16._PA_137_[PER]
AG__GG______GG__AG
17._PA_137_[PER]
AG__GG______GG__AG
18._PA_137_[PER]
AG__GG______GG__AG
19._RUQ_36
__-GG-__-__-GG_AG
20._GC-05-117-3-19
AG_CCGGGG__AA_CGGGGG_AG
21._GC-05-009-1-09
AG_CCGGGG__AA_CGGGGG_AG
22._GC-05-009-1-09
AG_CCGGGG__AA_CGGGGG_AG
23._GC-05-009-1-09
AG_CCGGGG__AA_CGGGGG_AG
24._GC-05-009-1-09
AG_CCGGGG__AA_CGGGGG_AG
25._GC-05-009-1-09
AG_CCGGGG__AA_CGGGGG_AG
26._GC-05-117-3-19
AG_CCGGGG__AA_CGGGGG_AG
27._GC-05-117-3-19
AG_CCGGGG__AA_CGGGGG_AG
28._GC-05-117-3-19
AG_CCGGGG__AA_CGGGGG_AG
29._GC-05-117-3-19
AG_CCGGGG__AA_CGGGGG_AG
30._RUQ_36
AA__GT_________AG
31._PA137[PER]
__________CC___
32._RUQ_36
___CCGG__AA_CGCCGG_AG
33._MITC-000400
___CCGG__AA_CGCCGG_AG
34._PA_137_[PER]_Fld#_201_Plt#_2
___CCGG__AA_CGCCGG_AG
 4344454647484950515253545556
_Input profile
TTTTAACTGGCTCCGGAATTGGTTGGGG
1._RUQ_1081
TT________TT____
2._RUQ_1081
____GG_CC__TT____
3._RUQ_36
____GG_CC__TT____
4._RUQ_1081
____GG_CC__TT____
5._PA_137_[PER]
____GG_CC__TT____
6._PA_137_[PER]
____GG_CC__TT____
7._PA_137_[PER]
____GG____TT____
8._PA_137_[PER]
____GG____TT____
9._PA_137_[PER]
____GG_CC__TT____
10._PA_137_[PER]
____GG_CC__TT____
11._PA_137_[PER]
____GG_CC__TT____
12._PA_137_[PER]
____GG_CC__TT____
13._PA_137_[PER]
____GG_CC__TT____
14._PA_137_[PER]
____GG_CC__TT____
15._PA_137_[PER]
____GG_CC__TT____
16._PA_137_[PER]
____GG_CC__TT____
17._PA_137_[PER]
____GG_CC__TT____
18._PA_137_[PER]
____GG_CC__TT____
19._RUQ_36
CT________-____
20._GC-05-117-3-19
TT___GG_CC__TT____
21._GC-05-009-1-09
TT___GG_CC__TT____
22._GC-05-009-1-09
TT___GG_CC__TT____
23._GC-05-009-1-09
TT___GG_CC__TT____
24._GC-05-009-1-09
TT___GG_CC__TT____
25._GC-05-009-1-09
TT___GG_CC__TT____
26._GC-05-117-3-19
TT___GG_CC__TT____
27._GC-05-117-3-19
TT___GG_CC__TT____
28._GC-05-117-3-19
TT___GG_CC__TT____
29._GC-05-117-3-19
TT___GG_CC__TT____
30._RUQ_36
____GG____GT____
31._PA137[PER]
______________
32._RUQ_36
____GG____AA____
33._MITC-000400
____GG____AA____
34._PA_137_[PER]_Fld#_201_Plt#_2
____GG____AA____
 575859           
_Input profile
CCCTTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1081
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_1081
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_36
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_1081
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._PA_137_[PER]
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._RUQ_36
-__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-05-117-3-19
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-05-009-1-09
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-05-009-1-09
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-05-009-1-09
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-05-009-1-09
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-05-009-1-09
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-05-117-3-19
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-05-117-3-19
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-05-117-3-19
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-05-117-3-19
CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._RUQ_36
CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._PA137[PER]
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._RUQ_36
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._MITC-000400
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._PA_137_[PER]_Fld#_201_Plt#_2
GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_137_[PER] RUQ_1081

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_137_[PER] RUQ_1081

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._PA_137_[PER] RUQ_36

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._PA_137_[PER] RUQ_1081

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

6._PA_137_[PER]

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

7._PA_137_[PER]

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

8._PA_137_[PER]

identical
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

9._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

11._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

12._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

13._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

14._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

15._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

16._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

17._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

18._PA_137_[PER]

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

19._PA_137_[PER] RUQ_36

93.8 %
8 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

24._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._PA_137_[PER] GC-05-009-1-09

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

27._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._PA_137_[PER] GC-05-117-3-19

92.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._PA_137_[PER] RUQ_36

85 %
10 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_137_[PER] PA137[PER]

71.4 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._PA_137_[PER] RUQ_36

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._PA_137_[PER] MITC-000400

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

34._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

64.7 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1253 53TcSNP1275 54TcSNP1293 55TcSNP1401
56TcSNP1404 57TcSNP1458 58TcSNP1524 59TcSNP1527